how to compress / minify javascript that has embedded php -

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my jquery scripts have php in them initiate variables, etc. i'm trying use minify compress , deter prying eyes. php causing issues. done similar?

here example of php-infused javascript:

    $('input[name=type]:radio').filter('[value=<?=$type?>]').attr('checked', true);     $('input[name=cert]:checkbox').filter('[value=<?=$cert?>]').attr('checked', true);     $('input[name=gauge]:checkbox').filter('[value=<?=$gauge?>]').attr('checked', true);

php attempts separate javascript in way. in php file keep values follows:

file.php: 

<html> <head>...</head> <body> ... <input type="hidden" id ="value_type" value="<?=$type?>" /> <input type="hidden" id ="value_cert" value="<?=$cert?>" /> <input type="hidden" id ="value_gauge" value="<?=$gauge?>" /> ... </body> </html>

file.js:

$(function() {    $.data_values = {       "type": $("#value_type").val(),      "cert": $("#value_cert").val(),      "gauge": $("#value_gauge").val()    };  });

when have use values:

$('input[name=type]:radio').filter('[value="'+$.data_values.type +'"]').attr('checked', true); $('input[name=cert]:checkbox').filter('[value="'+$.data_values.cert +'"]').attr('checked', true); $('input[name=gauge]:checkbox').filter('[value="'+$.data_values.gauge +'"]').attr('checked', true);

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